Resources

Publications

The fungal pathogen Candida albicans autoinduces hyphal morphogenesis by raising extracellular pH

S Vylkova, AJ Carman, HA Danhof, JR Collette, H Zhou, MC Lorenz
mBio 2011 May 17; 2(3):e00055-11.

Transcriptional response of Mycoplasma genitalium to osmotic stress

W Zhang, JB Baseman
Microbiology. 2011 Feb; 157(Pt 2):548-56.

Placental microRNA expression in pregnancies complicated by preeclampsia

DA Enquobahrie, DF Abetew, TK Sorensen, D Willoughby, K Chidambaram, MA Williams
Am J Obstet Gynecol. 2011 Feb; 204(2):178.e12-21

Distinctive DNA methylation patterns of cell-free plasma DNA in women with malignant ovarian tumors

TE Liggett, A Melnikov, Q Yi, C Replogle, W Hu, J Rotmensch, A Kamat, AK Sood, V Levensen
Gynecol Oncol. 2011 Jan; 120(1):113-20.

Responses of human endothelial cells to pathogenic and non-pathogenic Leptospira species

DG Martinez-Lopez, M Fahey, J Coburn
PLoS Negl Trop Dis. 2010 Dec 14; 4(12):e918.

Altered gene expression profiles in the brain, kidney, and lung of deceased neonatal cloned pigs

J Park, SL Marjani, L Lai, M Samuel, D Wax, SR Davis, RS Bruno, RS Prather, X Yang, XC Tian.
Cellular Reprogramming (Formerly "Cloning and Stem Cells"). October 2010, 12(5): 589-597.

PPARγ-induced cardiolipotoxicity in mice is ameliorated by PPARα deficiency despite increases in fatty acid oxidation

Ni-Huiping Son, S Yu, J Tuinei, K Arai, H Hamai, S Homma, GI Shulman, ED Abel, and IJ Goldberg.
J Clin Invest. 2010 October 1; 120(10): 3443–3454.

Microarray analysis of gene expression by skeletal muscle of three mouse models of Kennedy disease/spinal bulbar muscular atrophy

K Mo, Z Razak, P Rao, Z Yu, H Adachi, M Katsuno
PLoS One. 2010 Sep 23;5(9):e12922.

Transcriptome of swarming Proteus mirabilis

MM Pearson, DA Rasko, SN Smith, HL Mobley
Infect Immun. 2010 Jun;78(6):2834-45.

Differential methylation of cell‐free circulating DNA among patients with pancreatic cancer versus chronic pancreatitis

T Liggett, A Melnikov, Q Yi, C Replogle, R Brand… -
Cancer, 2010 April 1, 116(7): 1674–1680.

Methylation patterns of cell-free plasma DNA in relapsing-remitting multiple sclerosis

T Liggett, A Melnikov, S Tilwalli, Q Yi, H Chen, C Replole, X Feng, A Reder, D Stefoski, R Balabanov, V Levenson
J Neurol Sci. 2010 Mar 15; 290(1-2):16-21.

Identification of a modular pathogenicity island that Is widespread among urease-producing uropathogens and shares features with a diverse group of mobile elements

EL Flannery, L Mody, HLT Mobley Infect Immun. 2009 November; 77(11):4887–4894.

Trypanosoma cruzi targets Akt in host cells as an intracellular antiapoptotic strategy.

MV Chuenkova, M PereiraPerrin Sci Signal. 2009 November 17; 2(97): ra74.

Pressure-mediated hypertrophy and mechanical stretch induces IL-1 release and subsequent IGF-1 generation to maintain compensative hypertrophy by affecting Akt and JNK pathways.

S Honsho, S Nishikawa, K Amano, K Zen, Y Adachi, E Kishita, A Matsui, A Katsume, S Yamaguchi, K Nishikawa, K Isoda, DWH Riches, S Matoba, M Okigaki, H Matsubara Circ Res. 2009 Nov 20;105(11):1149-58.

Regulation of expression of the Haemophilus ducreyi LspB and LspA2 proteins by CpxR

M Labandeira-Rey, JR Mock, EJ Hansen
Infect Immun. 2009 Aug; 77(8):3402-11.

Expression profile of mammalian microRNAs in endometrioid adenocarcinoma

W Wu, Z Lin, Z Zhuang, X Liang
European Journal of Cancer Prevention, 2009 February; 18(1):50-55.

Gene and protein expression profiling of the fat-1 mouse brain

D Ménesi, K Kitajka, E Molnár, Z Kis, J Belleger, M Narce, JX Kang, LG Puskas, UN Das
Prostaglandins Leukot Essent Fatty Acids. 2009 Jan; 80(1):33-42.

Gene expression patterns in glucose-stimulated podocytes

SH Han, S Yang, DS Jung, JJ Li, JJ Kim, SJ Kwak, DK Kim, SJ Moon, JE Lee, D-S Han, S-W Kang
Biochemical and Biophysical Research Communications, 2008 June, 6 370(3): 514-518.

Transcriptional interplay among the regulators Rrp2, RpoN and RpoS in Borrelia burgdorferi

Z Ouyang, JS Blevins, MV Norgard
Microbiology. 2008 Sep; 154(Pt 9):2641-58.

Essential role of the response regulator Rrp2 in the infectious cycle of Borrelia burgdorferi

BK Boardman, M He, Z Ouyang, H Xu, X Pang, XF Yang
Infect Immun. 2008 Sep; 76(9):3844-53.

Role of heme in the antifungal activity of the azaoxoaporphine alkaloid sampangine

AK Agarwal, T Xu, MR Jacob, Q Feng, MC Lorenz, LA Walker, AM Clark
Eukaryot Cell. 2008 Feb; 7(2):387-400.

Array-based multiplex analysis of DNA methylation in breast cancer tissues

AA Melnikov, DM Scholtens, EL Wile, SA Khan, VV Levenson
J Mol Diagn. 2008 Jan; 10(1):93-101.

Metabolic analysis of Moraxella catarrhalis and the effect of selected in vitro growth conditions on global gene expression

W Wang, L Reitzer, DA Rasko, MM Pearson, RJ Blick, C Laurence, EJ Hansen
Infect Immun. 2007 Oct;75(10):4959-71

The nonhomologous end joining factor Artemis suppresses multi-tissue tumor formation and prevents loss of heterozygosity

Y Woo, SM Wright, SA Maas, TL Alley, LB Caddle, S Kamdar, J Affourtit, O Foreman1, E C Akeson, D Shaffer, R T Bronson, HC Morse III, D Roopenian and KD Mills
Oncogene. 2007 Sep 6;26(41):6010-20.

Temporal analysis of Candida albicans gene expression during biofilm development

KM Yeater, J Chandra, G Cheng, PK Mukherjee, X Zhao, SL Rodriguez-Zas, KE Kwast, MA Ghannoum, LL Hoyer
Microbiology. 2007 Aug; 153(Pt 8):2373-85.

MicroRNA expression profiling during human cord blood-derived CD34 cell erythropoiesis

ML Choong, HH Yang, I McNiece
Exp Hematol. 2007 Apr; 35(4):551-64.

Lithium treatment prevents neurocognitive deficit resulting from cranial irradiation

EM Yazlovitskaya, E Edwards, D Thotala, A Fu, KL Osusky, WO Whetsell Jr, B Boone, ET Shinohara, DE Hallahan
Cancer Res. 2006 Dec 1; 66(23):11179-86.

Sigma X induces competence gene expression in Streptococcus pyogenes

RL Woodbury, X Wang, CP Moran Jr.
Research in Microbiology, 2006 November; 157(9):851-856.

Metabolic-state-dependent remodeling of the transcriptome in response to anoxia and subsequent reoxygenation in Saccharomyces cerevisiae

LC Lai,1 AL Kosorukoff, PV Burke, KE Kwast
Eukaryot Cell. 2006 Sep; 5(9):1468-89.

Two dual specificity kinases are preferentially induced by wild-type rather than by oncogenic RAS P-21 in Xenopus oocytes

Y Qu, V Adler, T Chu, O Platica, J Michl, S Pestka, L Izotova, M Boutjdir, MR Pincus.
Frontiers in Bioscience. 2006 September 1; 11: 2420-2427.

Identification of Francisella tularensis genes affected by iron limitation

K Deng, RJ Blick, W Liu, EJ Hansen
Infection and Immunity, 2006 July; 74(7): 4224-4236.

RscA, a member of the MDR1 family of transporters, is repressed by CovR and required for growth of Streptococcus pyogenes under heat stress

TL Dalton, JT Collins, TC Barnett, JR Scott
J Bacteriol. 2006 Jan; 188(1):77-85.

Global gene expression analyses of mouse fibroblast L929 cells exposed to IC50 MMA by DNA microarray and confirmation of four detoxification genes' expression by Real-time PCR

A Ishikawa, S Jinno, T Suzuki, T Hayashi, T Kawai, T Mizuno, T Mori, M Hattori
Dental Materials J 2006; 25(2): 205-213.

Unique aspects of gene expression during Candida albicans mating and possible G1 dependency

R Zhao, KJ Daniels, SR Lockhart, KM Yeater, LL Hoyer, DR Soll
Eukaryot Cell. 2005 July; 4(7):1175–1190.

Analysis of the Candida albicans Als2p and Als4p adhesins suggests the potential for compensatory function within the Als family

X. Zhao, S.-H. Oh, K. M. Yeater, and L. L. Hoyer
Microbiology. 2005 May; 151(Pt 5): 1619–1630.

Dynamical remodeling of the transcriptome during short-term anaerobiosis in Saccharomyces cerevisiae: Differential response and role of Msn2 and/or Msn4 and other factors in galactose and glucose media

LC Lai, AL Kosorukoff, PV Burke, KE Kwast
Mol Cell Biol. 2005 May; 25(10): 4075–4091

Chaotic mixer improves microarray hybridization

MK McQuain, K Seale, J Peek, TS Fisher, S Levy, MA Stremler, FR Haselton
Anal Biochem. 2004 Feb 15;325(2):215-26.

Effects of relative humidity and buffer additives on the contact printing of microarrays by quill pins

MK McQuain, K Seale, J Peek, S Levy, FR Haselton
Anal Biochem. 2003 Sep 15;320(2):281-91.